AgileVCFMapper allows exome sequence variants in *.VCF files to be used to map disease loci in a similarly manner to AutoSNPa and IBDFinder. While it doesn't duplicate the functions of Phaser, Sample and DominantMapper, AgileVCFMapper can export the exome variant data to a coherent set of SNP genotype files that these programs can use.

If the exome variant dataset contains variants from both parents and their children, AgileVCFMapper is also able to screen the variants for genotypes that do not follow a Mendelian inheritance pattern.

Guide to use of AgileVCFMapper

The AgileVCFMapper user guide can be found here.


The AgileVCFMapper program can be downloaded here

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