AgileGeneFilter
Description
AgileGeneFilter allows sequence variants exported from AgileVariantViewer or AgileAnnotator to be filtered, by first identifying the proteins that are affected by the sequence variants and then performing a textual data search on these proteins, using information downloaded from the UNI-Prot web page. The text search is composed of two parts:
- Keyword search against the description of the protein's function, structure and cellular localisation as stated by UNI-Prot. The keyword search is also performed against gene name, the protein family's description and the references as used by UNI-Prot
- Matching gene ontology terms selected by the user against those linked to the protein by UNI-Prot
Guide explaining how to use AgileGeneFilter:
AgileGeneFilter's user guide can be found here.
Download
AgileGeneFilter program can be downloaded here
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Return to the Agile program page here.